一、基本情况

职称：研究员、硕士生导师、博士生导师

邮箱：zqiangx@gmail.com  

研究领域：基因组与大数据育种

招生专业：博士：作物遗传育种

  硕士：作物学/农艺与种业/资源利用与植物保护

教育背景：

2016.01-2017.11 美国 加州大学戴维斯分校UCDavis 访问学者/生物信息学

2012.09-2018.12 中国 华中农业大学 作物遗传育种 博士

2005.09-2008.06 中国 海南大学 作物遗传育种 硕士

2001.09-2005.06 中国 华南热带农业大学 生物技术 学士

学历：研究生

学位：博士

工作简历

2020.07-至今   中国 海南大学 副研究员

2018.01-2020.07 中国 中国热带农业科学院热带生物技术研究所 副研究员

2013.01-2017.12  中国 中国热带农业科学院热带生物技术研究所 助理研究员

2008.12-2012.12  中国 中国热带农业科学院热带生物技术研究所 研究实习员

编审

2017年7月-至今 Acta Physiologiae Plantarum国际学术期刊（SCI）

2018年12月-至今 Plos One国际学术期刊（SCI）

2018年2月-至今 Plant Physiology and Biochemistry 国际学术期刊（SCI）

2018年1月-至今 Frontiers of Agricultural Science and Engineering国际学术期刊（SCI）

2019年6月-至今 Industrial Crops and Products国际学术期刊（SCI 一区）

2019年12月-至今 Biotechnol Biofuels 国际学术期刊（SCI 一区）

2020年1月-至今 Horticulture Research国际学术期刊（SCI一区）

二、获奖情况

1. 2015年海南省科技进步一等奖：木薯比较基因组及光合产物高效积累机理 2015-J-1-R-048

2. 2016-2017年度神农中华农业科技奖二等奖：木薯全基因组测序及育种基础 KJ2017-R2-012-03

3. 2016年世界块根块茎作物大会（World Congress On Root And Tuber Crops）大会Poster一等奖

三、科研概况

代表性科研项目

1. 国家重点研发计划项目，2019YFD1000500，热带作物种质资源精准评价与基因发掘，2019.01-2022.12，120万，在研，专题负责人

2. 国家重点研发计划项目，2019YFD1001100，热带作物高效育种技术与品种创制，2019.01-2022.12，200万，在研，专题负责人

3. 滇桂黔石漠化地区特色作物产业发展关键技术集成示范项目，SMH2019-2021，石漠化地区特色作物指纹图谱开发，2019.01-2022.12，60万，在研，主持

4. 国家自然科学基金青年基金项目，31301102，基因组随机扩增序列SNP多态性及甲基化多态性（AFSM），2014.01-2016.12，23万元，已结题，主持

取得专利

1. 测序引物组及基于PCR的全基因组测序方法 201910261027.9

2. 基因组随机扩增序列SNP多态性及甲基化多态性（AFSM）201410154134.9

3. 一种胞嘧啶甲基化挖掘的方法 201611198974.0

4. 一种全基因组高效基因区富集测序方法201611199575.6

5. Whole Genome High-Efficiency Gene Region Enriching and Sequencing Method 2021105278 2021.8 1 国际专利

6. A Simple, Cost-effective and Amplification-based Whole Genome Sequencing  Approach 2020/06979 2021.6 1 国际专利

出版著作

论文

1. Zhiqiang Xia, Dongmei Huang, Shengkui Zhang, Wenquan Wang, Funing Ma, Bin Wu, Yi Xu, Bingqiang Xu, Di Chen, Meiling Zou, Huanyu Xu, Xincheng Zhou, Rulin Zhan, Shun Song. Chromosome-Scale Genome Assembly Provides Insights into the Evolution and Flavor Synthesis of Passion Fruit (Passiflora edulis Sims) 2020（Horticulture Research, IF：6.793，一区，第一作者）

2. Shengkui Zhang(#), Zhiqiang Xia(#), Wenqing Zhang, Can Li, Xiaohan Wang, Xianqin Lu, Xianyan Zhao, Haizhen Ma, Xincheng Zhou, Weixiong Zhang, Tingting Zhu, Pandao Liu, Guodao Liu, Hubiao Yang, Jacobo Arango, Michael Peters, Wenquan Wang, Tao Xia Chromosome-Scale Genome Assembly Provides Insights into Speciation of Allotetraploid and Massive Biomass Accumulation of Elephant Grass (Pennisetum purpureum Schum.) Molecular Ecology Resources 2022,1（（SCI收录，IF：7.090，第一作者）

3. Kaixing Fang, Zhiqiang Xia, Hongjian Li, Xiaohui Jiang, Dandan Qin, Qiushuang Wang, Qing Wang, Chendong Pan, Bo Li and Hualing Wu, Genome-wide Association Analysis Identifies Molecular Markers Asociated with Tea Flavor-related Metabolites 2021（Horticulture Research, IF：6.793，一区，第一作者）

4. Xia Z, Zou M, Zhang S, Feng B, Wang W. AFSM sequencing approach: a simple and rapid method for genome-wide SNP and methylation site discovery and genetic mapping. Scientific Reports, 2014, 4: 7300. （SCI收录，IF：5.578，第一作者）

5. Gu J#, Xia Z#, Luo Y, Jiang X, Qian B, Xie H, Zhu J, Xiong L, Zhu J, Wang Z. Spliceosomal protein U1A is involved in alternative splicing and salt stress tolerance in Arabidopsis thaliana. Nucleic Acids Res, 2018, 46(4):1777-1792.（SCI收录，IF：11.561，第一作者）

6. Xia Z, Zhang S, Wen M, Lu C, Sun Y, Zou M, Wang W. Construction of an ultrahigh-density genetic linkage map for Jatropha curcas L. and identification of QTL for fruit yield. Biotechnol Biofuels, 2018, 11:3（SCI收录，IF：5.497，第一作者）

7. Xia Z, Liu K, Zhang S, Yu W, Zou M, He L, Wang W. An ultra-high density map allowed for mapping QTL and candidate genes controlling dry latex yield in rubber tree. Industrial Crops and Products, 2018, 120:351-356. （SCI收录，IF：3.849，第一作者）

8. Wang W#, Feng B#, Xiao J#, Xia Z, Zhao X, Li P, Zhang W, Wang Y, Moller B, Liu B, Li K, Peng M. Cassava genome from a wild ancestor to cultivated varieties. Nature Communications 2014, 5:5110（SCI收录，IF：11.470，第二作者）

9. Hu W#, Xia Z#, Yan Y, Ding Z, Tie W, Wang L, Zou M, Wei Y, Lu C, Hou X, Wang W, Peng M. Genome-wide gene phylogeny of CIPK family in cassava and expression analysis of partial drought-induced genes. Frontiers in plant science 2015, 6: 914.（SCI收录，IF：4.495，第一作者）

10. Wei Y#, Shi H#, Xia Z#, Tie W, Ding Z, Yan Y, Wang W, Hu W, Li K. Genome-Wide Identification and Expression Analysis of the WRKY Gene Family in Cassava. Frontiers in plant science 2016, 7, 25:1-18（SCI收录，IF：4.291，第一作者）

11. Zou M, Lu C, Zhang S, Chen Q, Sun X, Ma P, Xia Z*, Wang W*. Epigenetic map and genetic map basis of complex traits in cassava population. Scientific Reports. 2017, 7: 41232. （SCI收录，IF：4.259，通讯作者）

12. Shengkui Zhang(#), Zhiqiang Xia(#), Wenqing Zhang, Can Li, Xiaohan Wang, Xianqin Lu, Xianyan Zhao, Haizhen Ma, Xincheng Zhou, Weixiong Zhang, Tingting Zhu, Pandao Liu, Guodao Liu, Hubiao Yang, Jacobo Arango, Michael Peters, Wenquan Wang, Tao Xia Chromosome-Scale Genome Assembly Provides Insights into Speciation of Allotetraploid and Massive Biomass Accumulation of Elephant Grass (Pennisetum purpureum Schum.) bioRxiv,2020 doi: https://doi.org/10.1101/2020.02.28.970749 （第一作者）

13. Congshan Xu 1,†, Zhiqiang Xia 2,†, Zhiqiang Huang 3, Chao Xia 4, Jing Huang 1, Manrong Zha 5, Shujuan Wang 1, Muhammad Imran 1,6, Shaun Casteel 1,  Yiwei Jiang 1, Cankui Zhang 1,7,*Understanding the Physiological and Transcriptional Mechanism of Reproductive Stage Soybean in Response to Heat Stress 2020 Crop Breed Genet Genom 2020;2(1):e200004.

14. Luo M, Gu Y, Puiu D, Wang H, Twardziok S, Deal K, Huo N, Zhu T, Wang L, Wang Y, McGuire P, Liu S, Long H, Ramasamy R, Rodriguez J, Van S, Yuan L, Wang Z, Xia Z, Xia L, Anderson O, Ouyang S, Liang Y, Zimin A, Pertea G, Salzberg S, Devos K, Dvorak J. Genome sequence of the progenitor of the wheat D genome Aegilops tauschii. Nature, 2017, 551:7681. （SCI收录，IF：41.577）

15. Liu J#, Xia Z#, Tian X#, Li Y. Transcriptome sequencing and analysis of rubber tree (Hevea brasiliensis Muell.) to discover putative genes associated with tapping panel dryness (TPD). BMC Genomics 2015,16:398. （SCI收录，IF：3.867，第一作者）

16. Hao C#, Xia Z#, Fan R, Tan L, Hu L, Wu B, Wu H. De novo transcriptome sequencing of black pepper (Piper nigrum L.) and an analysis of genes involved in phenylpropanoid metabolism in response to Phytophthora capsici. BMC Genomics 2016, 17: 822. （SCI收录，IF：3.729, 第一作者）

17. Zhang S, Chen X, Lu C, Ye J, Zou M, Lu K, Feng S, Pei J, Liu C, Zhou X, Ma P, Li Z, Liu C, Liao Q, Xia Z*, Wang W*. Genome-Wide Association Studies of 11 Agronomic Traits in Cassava (Manihot esculenta Crantz). Frontiers in Plant Science, 2018, 9:503. （SCI收录，IF：3.678，通讯作者）

18. Hu W#, Wei Y#, Xia Z#, Yan Y, Hou X, Zou M, Lu C, Wang W, Peng M. Genome-wide identification and expression analysis of the NAC transcription factor family in cassava. PloS one 2015, 10(8): e0136993.（SCI收录，IF：3.057，第一作者）

19. Hu W#, Hou X#, Xia Z#, Yan Y, Wei Y, Wang L, Zou M, Lu C, Wang W, Peng M. Genome-wide survey and expression analysis of the calcium-dependent protein kinase gene family in cassava. Molecular Genetics and Genomics 2016, 291(1):241-253.（SCI收录，IF：2.979，第一作者）

20. Zou M#, Xia Z#, Ling P, Zhang Y, Chen X, Wei Z, Bo W, Wang W. Mining EST-Derived SSR Markers to Assess Genetic Diversity in Cassava (Manihot esculenta Crantz). Plant Mol Biol Rep, 2011, 29:961-971 (SCI，IF：2.153, 第一作者)

21. Tang Y#, Xia Z#, Ding Z#, Ding Y, Liu Z, Ma X, Liu J. Construction of a high-density linkage map and QTL mapping for important agronomic traits in Stylosanthes guianensis (Aubl.) Sw. Scientific Reports, 2019, 9:3834.（影响因子：4.36，第一作者）

22. Zou M#, Xia Z#, Lu C, Wang H, Ji J, Wang W. Genetic Diversity and Differentiation of Aquilaria sinensis (Lour.) Gilg Revealed by ISSR and SRAP Markers. CROP SCIENCE, 2012, 52(5):2304-2313 (SCI，IF：1.513, 第一作者)

23. Chen X#, Xia Z#, Fu Y, Lu C, Wang W. Constructing a genetic linkage map using an F-1 population of non-inbred parents in Cassava (Manihot esculenta Crantz). Plant Mol Biol Reporter 2010, 28:676-683 (SCI，IF：0.825, 第一作者)

24. Yang C#, Xia Z#, Hu J, Zhuang Y, Pan Y, Liu J. Transcriptome analysis of Oncidium petals provides new insights into the initiation of petal senescence. Journal of Horticultural Science and Biotechnology, 2018, 94(1):1-12.（影响因子：0.715，第一作者）

25. Chen X, Xia J, Xia Z, Zhang H, Zeng C, Lu C, Zhang W, Wang W. Potential functions of microRNAs in starch metabolism and development revealed by miRNA transcriptome profiling of cassava cultivars and their wild progenitor. BMC Plant Biology 2015, 15:33（SCI，IF：3.930）

26. Ye J, Yang H, Shi H, Wei Y, Tie W, Ding Z, Yan Y, Luo Y, Xia Z, Wang W, Peng M, Li K, Zhang H, Hu W. The MAPKKK gene family in cassava: Genome-wide identification and expression analysis against drought stress. Scientific reports 2017, 7: 14939.（影响因子：4.259）

27. Ma P#, Chen X#, Liu C, Xia Z, Song Y, Zeng C, Li Y, Wang W. MePHD1 as a PHD-Finger protein negatively regulates ADP-Glucose pyrophosphorylase small subunit1a gene in cassava. International Journal of Molecular Sciences 2018, 19: 2831.

28. Shang S#, Wu C#, Huang C#, Tie W, Yan Y, Ding Z, Xia Z, Wang W, Peng M, Tian L, Hu W. Genome-Wide Analysis of the GRF Family Reveals Their Involvement in Abiotic Stress Response in Cassava. Genes 2018, 9: 110.（影响因子：3.49）

29. Hu W, Yan Y, Tie W, Ding Z, Wu C, Ding X, Wang W, Xia Z, Guo J, Peng M. Genome-Wide Analyses of Calcium Sensors Reveal Their Involvement in Drought Stress Response and Storage Roots Deterioration after Harvest in Cassava. Genes, 2018, 9: 221.（影响因子：3.49）

30. Ou W#, Mao X#, Huang C#, Tie W, Yan Y, Ding Z, Wu C, Xia Z, Wang W, Zhou S, Li K, Hu W. Genome-Wide Identification and Expression Analysis of the KUP Family under Abiotic Stress in Cassava (Manihot esculenta Crantz). Frontiers in Physiology. 2018; 9: 17.（影响因子：3.66）

31. Hu M, Hu W, Xia Z, Zhou X, Wang W. Validation of Reference Genes for Relative Quantitative Gene Expression Studies in Cassava (Manihot esculenta Crantz) by Using Quantitative Real-Time PCR. Frontiers in plant science 2016, 7:680（SCI，IF：3.678）

32. Ma P#, Chen X#, Liu C, Meng Y, Xia Z, Zeng C, Lu C, Wang W. MeSAUR1, encoded by a small auxin-up RNA gene, acts as a transcription regulator to positively regulate ADP-glucose pyrophosphorylase small subunit1a gene in cassava. Frontiers in Plant Science 2017, 8:1315.

33. Xu C#, Xia C#, Xia Z, Zhou X, Huang J, Huang Z, Liu Y, Jiang Y, Casteel S, Zhang C. Physiological and transcriptomic responses of reproductive stage soybean to drought stress. Plant Cell Reports 2018, 37:1611-1624.

34. Pei J, Wang H, Xia Z, Liu C, Chen X, Ma P, Lu C, Wang W. Phylogeny and expression pattern of starch branching enzyme family genes in cassava (Manihot esculenta Crantz) under diverse environments.  Molecular and Cellular Biochemistry 2015, 406 (1): 273-284（SCI，IF：2.561）